NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118687_10150204

Scaffold Ga0118687_10150204


Overview

Basic Information
Taxon OID3300009124 Open in IMG/M
Scaffold IDGa0118687_10150204 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)832
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameHudson Canyon, US Atlantic Margin
CoordinatesLat. (o)39.54345Long. (o)-72.3998Alt. (m)Depth (m)541.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002318Metagenome / Metatranscriptome571Y
F006528Metagenome / Metatranscriptome371Y
F016274Metagenome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0118687_101502041F006528N/AMKEKIKLSTNIDKEKLAIQTFKNIIEGSRSINGVTWNRIKNLKPKEQLQCLKQLS
Ga0118687_101502042F016274N/AMTRNKFGLPLIYDFNIALRDKRRIRNLEYMKWNCPKGWESIWSKKLDQLKKNINERKNKTLN*
Ga0118687_101502044F002318AGGMLKNKVYSITEDLEQRNPGKKFYSFMDMEDAEIRKKEVILPLPKKYFNKIVKFIKGEK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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