NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118728_1038675

Scaffold Ga0118728_1038675


Overview

Basic Information
Taxon OID3300009129 Open in IMG/M
Scaffold IDGa0118728_1038675 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0139513, Gp0139514
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2637
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)198
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022523Metagenome214Y
F026408Metagenome / Metatranscriptome198Y
F063091Metagenome130Y
F101067Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0118728_10386753F022523AGGMKTGDLVEFAYGRVGGQIGGLGVLAEVGTCGKHKVLFMGKGYWVPEQLIKPISIVRKDPANEPLDN*
Ga0118728_10386756F101067GGAMRTPTLDLHGFKHHEVQNVVARFIEDWLGKNLFIDIITGNSEQMLFEAVKVIQQYGLEYMTGLPAYPGRVRVVMYDEYH*
Ga0118728_10386758F063091AGGAMFYKSLFMLIFANMFNLTYQLENIECPKWVPGTNQLIPQGVSLSPELELQNRVRCYCEVVKSKEVECLSRYVPANICKARTRLWVENNLKLKDGFQLVNGVGPTPKRDRMMNVVP*
Ga0118728_10386759F026408GGAMTLLLVLVMGAFIGISAMLLFSTTNMETMIAGNTRRLNQAKISAASGLNHFNALGLNYNTLRERAGDLQTVQILPETRLSSHTSYEVKVYFSPLLSDGQYMVESTGYYTKGDRILSFHPIKALFQGEQ*
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