Basic Information | |
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Taxon OID | 3300009130 Open in IMG/M |
Scaffold ID | Ga0118729_1000105 Open in IMG/M |
Source Dataset Name | Combined Assembly of Gp0139511, Gp0139512 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Genomics Facility |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 116466 |
Total Scaffold Genes | 218 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 93 (42.66%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
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Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 103 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007770 | Metagenome | 345 | Y |
F029925 | Metagenome / Metatranscriptome | 187 | Y |
F042280 | Metagenome / Metatranscriptome | 158 | Y |
F060426 | Metagenome | 133 | Y |
F092065 | Metagenome / Metatranscriptome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0118729_1000105118 | F007770 | AGG | MSGEGLSVSFRRTAMTQKSNQELLREFQDLVYSNKKIMSHMKWYGRDHSVEIMEHGDEELAEWQREAVAIKDTFEFTISVYDSWHEDADIYESHKRDDSFVSLASEFARDNWLHYFPEGFPAEWIETKTIDGEKCWNHFNVKPDDKNIDKICQIWHSYGMDMITESSDKMKRSYWERAREGIKAIMEK* |
Ga0118729_1000105125 | F092065 | AGGA | MQEIIDKIYERMDFCANAHGATQEDEHNYILELSCLNEVLDKIERFPWNHFEDEAN* |
Ga0118729_1000105131 | F042280 | N/A | MKIKNKWDEEFEVSVGDWVGFKCDIEQIGRVKEIQRRGALIIENEDGFDGDYIGGDTEALVGFDEVWKES* |
Ga0118729_1000105171 | F060426 | N/A | MNNTESQLASFENLEFNQHPRFAEGTAIQARLKFGSRDQFEISVVQNIGSGTGLYGHEDDNTYEVAMWFDGRNTMLPLSLYDDVLAGQSPSDITRLMHQAHLNDFAWVTLLHSLRDEHRKEMELDN* |
Ga0118729_1000105183 | F029925 | AGG | MYILKSILNQAGAVWQVESIAMRKVEAERLLKRRLSTNDGSRRYGLFPAS* |
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