NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118729_1000105

Scaffold Ga0118729_1000105


Overview

Basic Information
Taxon OID3300009130 Open in IMG/M
Scaffold IDGa0118729_1000105 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0139511, Gp0139512
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116466
Total Scaffold Genes218 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (42.66%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F029925Metagenome / Metatranscriptome187Y
F042280Metagenome / Metatranscriptome158Y
F060426Metagenome133Y
F092065Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0118729_1000105118F007770AGGMSGEGLSVSFRRTAMTQKSNQELLREFQDLVYSNKKIMSHMKWYGRDHSVEIMEHGDEELAEWQREAVAIKDTFEFTISVYDSWHEDADIYESHKRDDSFVSLASEFARDNWLHYFPEGFPAEWIETKTIDGEKCWNHFNVKPDDKNIDKICQIWHSYGMDMITESSDKMKRSYWERAREGIKAIMEK*
Ga0118729_1000105125F092065AGGAMQEIIDKIYERMDFCANAHGATQEDEHNYILELSCLNEVLDKIERFPWNHFEDEAN*
Ga0118729_1000105131F042280N/AMKIKNKWDEEFEVSVGDWVGFKCDIEQIGRVKEIQRRGALIIENEDGFDGDYIGGDTEALVGFDEVWKES*
Ga0118729_1000105171F060426N/AMNNTESQLASFENLEFNQHPRFAEGTAIQARLKFGSRDQFEISVVQNIGSGTGLYGHEDDNTYEVAMWFDGRNTMLPLSLYDDVLAGQSPSDITRLMHQAHLNDFAWVTLLHSLRDEHRKEMELDN*
Ga0118729_1000105183F029925AGGMYILKSILNQAGAVWQVESIAMRKVEAERLLKRRLSTNDGSRRYGLFPAS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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