Scaffold Ga0115027_10267344

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115027_10267344

Scaffold Ga0115027_10267344

Overview

Basic Information
Taxon OID	3300009131 Open in IMG/M
Scaffold ID	Ga0115027_10267344 Open in IMG/M
Source Dataset Name	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1131
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location Name	Old Woman Creek National Estuarine Research Reserve, Ohio, USA
Coordinates	Lat. (^o)	41.224	Long. (^o)	-82.304	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019578	Metagenome	229	Y
F031716	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115027_102673441	F031716	AGGA	MSRFTPGPWLVKEENGSYGVFSNDALLAITLSDDIQDKDAEKANAHLMATAPRLLEVIIEIKEHLDNNLIVTEEGLKINDSHLRESIIDAIMRAEGYRI*
Ga0115027_102673442	F019578	N/A	MGKHALGPWHVRKKGEAVGVIGDDSSVVAVFPRKNRSDDTRINEAYLLAAAPLMLEACSKIHSILENSLVVTPEGFKMNISDIQKSLADAIMRAKGYRKTPHEP*

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