NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118736_10002092

Scaffold Ga0118736_10002092


Overview

Basic Information
Taxon OID3300009135 Open in IMG/M
Scaffold IDGa0118736_10002092 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4676
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameHudson Canyon, US Atlantic Margin
CoordinatesLat. (o)39.54345Long. (o)-72.3998Alt. (m)Depth (m)541
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008695Metagenome / Metatranscriptome329Y
F023447Metagenome / Metatranscriptome210Y
F037294Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0118736_100020924F023447N/AMETQAFMGTGELIPRLMAQVGSASFGMALAKKNGFLNTTGGLSALGIARNGMDAEERAIDRAGGTGIYNPTTNRVTQY*
Ga0118736_100020926F008695N/AMIKELVVDKVTHEWCEKDDRWVYIEYNSQRKIIGLNFMQGDEYEYFKKSWCKSDEGLTEFYNSMLYTFPIEKSSVNTLEFINKVMWSYHQACVSYEQFNEIN*
Ga0118736_100020929F037294N/AMSTTKKKKFYWNEDTLNHFKFNSSYQNKKQTIKEITLFVENECSLEDNETEEMLINDLINQIYNTN*
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