Scaffold Ga0066709_100003967

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066709_100003967

Scaffold Ga0066709_100003967

Overview

Basic Information
Taxon OID	3300009137 Open in IMG/M
Scaffold ID	Ga0066709_100003967 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11609
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033379	Metagenome	177	N
F049533	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066709_10000396710	F033379	N/A	MTACVGIAATLGTAVPIAQAEGFNPDLLKTGMALTDVVQTFGQPNRMEWVNQKGTPVLFLFYPTEDRFSLLRPFGNDLVTLQDGRTYTPLGFVTEILAGWGKKFYDQARFPQQ*
Ga0066709_1000039678	F049533	AGG	MSSAAIVAIIAFVCLLALPSLAVARTIKGHIVDVVAENIGNITVTVRTDAGDTKTFKASDWRLTANLHFNEPVTIEVDDQGNVKTITGEWQTKLKEILKLK*

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