NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066709_101573278

Scaffold Ga0066709_101573278


Overview

Basic Information
Taxon OID3300009137 Open in IMG/M
Scaffold IDGa0066709_101573278 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)943
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060988Metagenome132Y
F085429Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0066709_1015732781F060988GAGGMADRLTDRFRRVLQDQRGFALVIALGVTVVLSMTVVTVIEAARSNQRSSTMSSGRMSAYDLAEVGLNNAMSVLRLPTNNALDSYVFCPAVVPPATAPTLPCTNTNTYSSGTVSWYGNLYQNPAAGTAYWDLFSTGHVRNPFGGADYQKTIRATIPVVPITTQPLNNPSWNYIFSRAPGT
Ga0066709_1015732782F085429N/ARFQAQVTTRLALDKIRRDIHCANDVTPYAKTAVTLKISSGCGGDVSWCTAAVSGYTNRYRLYRQAGTTCSSATGVKFADFLTSDQVFPDFEHVTGCLCLASLQVDFPVSVKGTSVGAYELQDTIFLRNSTRI*
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