Scaffold Ga0114949_10309549

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114949_10309549

Scaffold Ga0114949_10309549

Overview

Basic Information
Taxon OID	3300009139 Open in IMG/M
Scaffold ID	Ga0114949_10309549 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1259
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kermadec Trench
Coordinates	Lat. (^o)	-34.3456	Long. (^o)	-178.1771	Alt. (m)		Depth (m)	8081
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082711	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114949_103095493	F082711	N/A	MRTTELKRRLDGRTFRGQVPCSVSKTRPELGALIEWDDLGTFEGKIVQGIFAQKLMGPQSFRFCRSFCEMSMQAVADLLQVDRRTVQRWESEESPVPPWAMLLVSKMAEERSKGRAVMRSWLLELADEEGRPTEIDVDVA*

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