NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114129_10134288

Scaffold Ga0114129_10134288


Overview

Basic Information
Taxon OID3300009147 Open in IMG/M
Scaffold IDGa0114129_10134288 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3396
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021738Metagenome / Metatranscriptome217Y
F055622Metagenome / Metatranscriptome138Y
F065628Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0114129_101342882F055622GAGMSNRSAQEKGKAMPPSTKTKIVPGKSRIHWMRTLSASVASFLAGARSQPQPDLVTTKHSQVFYERGVSPWAAPDFGMLVESDVSKKSSGIVS*
Ga0114129_101342883F065628AGGAGVVTRLLLLCLCLGVLSTVAGCNVAFPSYGTSASGGGTDRETQPYSKQWGRWDEMYHPWDRPTGYYSE*
Ga0114129_101342884F021738GGAGMLHAYRLAYPDSPHAPERLWEWDKVHVGRLLWNATAFGRALTHRYFLTWEALAQQNQRIWEVYYLPRPLYEPWESWHAWLDEYRELVRDAQDLYEEHHGRRHND*
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