NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114129_10149606

Scaffold Ga0114129_10149606


Overview

Basic Information
Taxon OID3300009147 Open in IMG/M
Scaffold IDGa0114129_10149606 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3195
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016588Metagenome / Metatranscriptome246N

Sequences

Protein IDFamilyRBSSequence
Ga0114129_101496063F016588GAGMKTAGHARKRHLTLRNILLLGLASLICGCESRLGSDEAGLIDAVAFVTGGQQEGDLPQGFETRWRRTVEGREIRYETIRQNPGFGEENDPHRGSRHVKVGVSISSPQKCVFKTVIMTAYSRGGSKESFEPPSNETTTLDFNKVQRIDIEDGDRPSIVIDGKAWQCKDGKCQDRTMIGISAPRPEDLPRVIESKRRAVDFIKKSCLGTQR*
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