NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114129_12299654

Scaffold Ga0114129_12299654


Overview

Basic Information
Taxon OID3300009147 Open in IMG/M
Scaffold IDGa0114129_12299654 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026518Metagenome / Metatranscriptome197Y
F085459Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0114129_122996541F085459GAGMNEIVALLESLRPILERWYLLVFAIVLVTLLGIPARVLVSALAALLRVPATFTRAEIDSPLRRAAPTAPYRLLRNLRDYFRPVLDRPARGLARAV
Ga0114129_122996542F026518N/AFIERTQAAIRGASPVQDPAGTDIYGSLAVAGGVFGANPGKHKLVLFSDMTDTVGNPIRPDLAQSDIVVGLYHRDDPNDQGKGQRDWETTFKTLNARTPVFLPWAATTPEKIVEQLKASGR
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