NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105243_10587293

Scaffold Ga0105243_10587293


Overview

Basic Information
Taxon OID3300009148 Open in IMG/M
Scaffold IDGa0105243_10587293 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005278Metagenome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0105243_105872932F005278GGAGMTRLKKTFYLPAFVFLIIMLAAHHINGQSNSQPLTFRSGQSVYIVAFRQFPQFTPDPSQCCSAQPEYLNNALDVERKVRKQIEEWHYFRVAEKPSEADFIFLVNLDESSIEGLAIPFEAYRLHFKERFDLDALREAAFGRYLIGPLKLPTVTRLSDRLVKQFREKVTKPGK*
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