NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114918_10216106

Scaffold Ga0114918_10216106


Overview

Basic Information
Taxon OID3300009149 Open in IMG/M
Scaffold IDGa0114918_10216106 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1106
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049595Metagenome / Metatranscriptome146N
F064194Metagenome / Metatranscriptome129N
F067690Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0114918_102161061F064194GGTGGMKTYLVEINAVVWKQIEVRAESVEAAETQAHELFDLAADGCPERYDQQTSQIWLDGKEMM
Ga0114918_102161062F049595AGGAGMQQVDYRFENHGSIFLCQPLNGAAKDNLDQACEGTKDFHIRWGDALVIDHRFANDIAQQLIEEGWIIE*
Ga0114918_102161064F067690N/AMEVRRMDNALHMGRMIQLELKLRDGGSYYLCDTKFSVMSGRIRRQINAIEHVVEHYASVNGIAVKHSYEEVVEMIRKAKGVK*
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