NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114921_10019981

Scaffold Ga0114921_10019981


Overview

Basic Information
Taxon OID3300009150 Open in IMG/M
Scaffold IDGa0114921_10019981 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from South Atlantic Ocean to uncover new lineages of life (NeLLi) - Benguela_00093 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3835
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-27.74Long. (o)14.251Alt. (m)Depth (m)1133
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087951Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0114921_100199811F087951N/AMPSLMSDSENLIDRELFLEKFEKMSLKLEQLTLEISKMKEKLDKTNKINRSFGLDALRNSKPLTFAREIHGIKSPTKRYILSIRTVSELWKGRKNDFLIAIRQQEKETHMDLKALGIRIPIDDMKNLTTLAREVLSMLYISSELKGIEITEILREIISQINKNGQSMVREVKQNMLL*
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