Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10000425 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10000425 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37558
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (14.71%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

37558

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (14.71%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031482	Metagenome / Metatranscriptome	182	Y
F048306	Metagenome	148	N
F051912	Metagenome / Metatranscriptome	143	N
F076073	Metagenome	118	Y
F077278	Metagenome	117	Y
F085162	Metagenome	111	Y
F085693	Metagenome	111	N
F090373	Metagenome / Metatranscriptome	108	Y
F092035	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000042511	F085162	AGTAG	MLKKLKQIWHEIIERWFLLTFFTERMERERLQILAELVKRKDTLWKNLSVKQRTVKEILTYKEPKKKSINELVEEYEKKSPVIQDALYEALKNIQQKENGNSKETNNKD*
Ga0114962_1000042513	F076073	AGG	MAVVIDLVDQIEHMFSKEPDKRKKTEHKEWKDTINKLIQDCNKLCKFKMYFLIK*
Ga0114962_1000042523	F085693	N/A	MNTLQTTLTALQSQLESQKEASKYYYDNVFSKEVATLEASIVEWFYKFTGETYTIKIESGGETLQIYSSEADVKDMWRHNAITINYYSRYKEEAKAKLSFYSKECEYDDTKTIAYLKTLGMVAVLLNQINFMMPVWKAEYQQYAQKRYATFEQPISHTEFAIRKTEAEILEQGLASYKQAGFTHTISSRTECERQYNIDRDLEGAYTLETKPQYFDLQTGRGRYDNVRVYAFEVVGHIKNGKVEMNIKTTAVEDGSFSPIVVTKARFDDFIATVYNWENFDSVKYNAKQTERYLDHMSKFTTVVEVA*
Ga0114962_1000042525	F077278	N/A	MTILQTTVDSASVGSAFMQYGILGILAFLLGYFAWQQYLRLVKKNEQLEEKIDKLQEQMLKIIVEERDRLDTLIRDNTAALQELQRTIYKYMVKSKE*
Ga0114962_100004253	F051912	N/A	MTEKEKAESMVDEFYQYTNTNSRENAKACAKIMAKEVLVKLKYYGAPQHAVEFWEETVLQIDRVPAFKD*
Ga0114962_1000042537	F090373	N/A	MLHEYTKAELNSMETIEQAWDGDELKIKTDTHRIWLVLRENRPYNGDYVVETNVDGRWEQASYYFN*
Ga0114962_100004254	F031482	N/A	MRNRYEKSPLSLIEGGSRIKITFKNGIEREYDNIKDVSAYVAKVLSESDYMINRIEMEKEVVTKEWKPLFGRHTYKSDLGNNFVNYNNYEI*
Ga0114962_1000042542	F092035	N/A	MTENFKEVQTAVDNMLNVKSYVRRKKKTQSDKKKEMFVQMINSLDEIFVRQGLMYADMDMDMFKYDEKFLAVIDIMIYFHFGEACSDVIAFYLYDRRNPDGTLNPILDDKDTEIILENPYDLWNLLVMVNPKIQD*
Ga0114962_100004259	F048306	N/A	MTKEEAEFINQLCENSAVTWTQVHIEYQKKFVDPSQWLEAGGYQKGSPLPHGNQIEGNELCKRAQTFKN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10000425

Overview

Ecosystem & Geography

Associated Families

Sequences