NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10000442

Scaffold Ga0114962_10000442


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10000442 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36769
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (75.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F058557Metagenome / Metatranscriptome135Y
F063689Metagenome129Y
F066774Metagenome / Metatranscriptome126Y
F073551Metagenome120Y
F082685Metagenome113N
F083714Metagenome112Y
F104778Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1000044210F058557N/AMAIKRFENVDVNTLTFSTNSYGENVTTITKKFTGRPLVSSVKNSLQITSDTRIYQDLINFKFQYTPWIQDIVINQNLYSFTWRTQDWRITNAIEADDKMSVTILCYRSDPVTKV*
Ga0114962_1000044218F083714AGGMVFNGHTIQDIDALDETTMNEIIVMYSDGVLGNNKNLVTMGTLTSGVFNYMRPPNSKSYTLKEMLGSAYNYIYREEASLPNESLLAFISQAPGFNIDKFKGKE*
Ga0114962_1000044220F000934GAGMANLNNILAIAESVGINDQKFVGQMISRNQRISASEILTVQPFAFDIKPMNYLLYSQNRNLLSALRVADKSTEQYLNFGTTGWTNYINYQGDMTSGQISSCQYQTSSANKNIVLGALPSISSTAYIVKTGDFLQINRYSYIATADVQRGIDTTVVIPVHRTILNTLASPVSAVIGQYGTTVSMGGTAYTGVTFPILLRDYPTYTLVPMTNDSFINWSGTFKAFENVLT*
Ga0114962_1000044222F002085GGALNPIYFYATDITWVNNSSNPVAWTNSSVQVVDWTSQAQTNIIRMADFVRVTTPTATYRFATTPKAITVSAVDSQPFDAVGSLVKIGDAARDIKSTSNETSVTLVGLDTALLGWVLSQNVKGSLIEMWHGFFDADNNLIVSGGTGGLYKFFTGYINSFSISEQWMEEIRQFVGTIVVSAASIQIILQNRTAGRYTNNNAWQFFNAGDTSMNRISYIQTINYSFGKTA*
Ga0114962_1000044231F073551N/AVNDTIDDYFDFLQDKTIKGIGADSYDGKNYLVILLSDGSLAYISSDNNLYIAVEKHLIN*
Ga0114962_1000044232F082685AGTAGMDMQEHTKHVLDTVSGLTAFGAIMNFLPAIAALLSIIWYCIRIYEWINSKINK*
Ga0114962_1000044247F066774AGGAMTQDNTMGNLETWVRQLNGELDVQEVAKTRPAPIEDIVAPYSVFLRMYDKVGLCAATNKRRSSRCNIEFVFDGNTRSLKSVRMIHNEK*
Ga0114962_1000044249F104778AGGAMETKAWLIEEVDQHGNVVWNITSFFEPDSLQWTKDLKGKKHNIIISRLGVIESKTINGIEKKYDSAKFVFGD*
Ga0114962_1000044252F063689N/AMSWAMEVLFRYLVFDDFGEPHKRFRTKHEAEVYIQNRPNHKIERLPTPPKENVFDLITDEPPF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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