NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10000936

Scaffold Ga0114962_10000936


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10000936 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25330
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (47.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016374Metagenome / Metatranscriptome247Y
F030663Metagenome / Metatranscriptome184Y
F044299Metagenome154Y
F046245Metagenome / Metatranscriptome151Y
F053886Metagenome140Y
F056408Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1000093610F044299GGAGMNQISQYLVSIDRPPYVDGRRVGQATPCRSYGQPSWFISFYDGYTHTSDPVFTDEDGLNGAPTVREYANNLGYEPCIN*
Ga0114962_1000093611F030663AGGAMYQLIFTFLVVTKAGLPGFNIEHISQFREIEDCEKTKTAMVAYMDKLVRENKMFPGVFECQKVQR*
Ga0114962_1000093612F016374AGGMNKEITLTPAGGRFYRAMAFHWVTVVFVMPVLATFMIAAILNPFWFRDSMFNFVERRVNEFTRWRNNVKYRIYLGCDPVVWHTLKGDLK*
Ga0114962_1000093624F053886AGGAMSRTLIWVLSWSVLGPVPESGEQAKFKTQAECEQARVQKREEYQAQKKQIVASCHQSTK*
Ga0114962_1000093650F046245N/AMWSYIITFFAVFATDLIYVYFVKSIQDNRPLMAAWWSMAVTFTASVAVINYTEDHWALIPALAGAYCGTLFGMWIKRKINGV*
Ga0114962_100009368F056408GGAMQKRVKELMAQTLDEKFSHTWTTLTPADLEKFVKHFAELLIRDCADVAYRFDGLTLGQGYTIAKHIKKNYEVEE*
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