Basic Information | |
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Taxon OID | 3300009151 Open in IMG/M |
Scaffold ID | Ga0114962_10004355 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11273 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (77.27%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008303 | Metagenome / Metatranscriptome | 335 | Y |
F011483 | Metagenome | 290 | Y |
F022157 | Metagenome | 215 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114962_1000435511 | F011483 | AGG | MTYDLVTYLRAEIKELHSILLETQLSLAEANDRLNRRSEPLSEERVYTLYRRSLDWRQLARDIEADHDIE* |
Ga0114962_100043554 | F022157 | GGAGG | MWDVSVTFMLMFFGAFTMIFWGALLIWVLYLLQNEADND* |
Ga0114962_100043556 | F008303 | AGG | MIDKIILSAVLGTVGFNGLFPAPPPPLTLQQKAKEASKSAVCNKSKKQSKTVKELCERWGKYD* |
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