Scaffold Ga0114962_10004355

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114962_10004355

Scaffold Ga0114962_10004355

Overview

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10004355 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11273
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (77.27%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008303	Metagenome / Metatranscriptome	335	Y
F011483	Metagenome	290	Y
F022157	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000435511	F011483	AGG	MTYDLVTYLRAEIKELHSILLETQLSLAEANDRLNRRSEPLSEERVYTLYRRSLDWRQLARDIEADHDIE*
Ga0114962_100043554	F022157	GGAGG	MWDVSVTFMLMFFGAFTMIFWGALLIWVLYLLQNEADND*
Ga0114962_100043556	F008303	AGG	MIDKIILSAVLGTVGFNGLFPAPPPPLTLQQKAKEASKSAVCNKSKKQSKTVKELCERWGKYD*

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