NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114962_10012007

Scaffold Ga0114962_10012007


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10012007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6341
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y
F010673Metagenome300Y
F074789Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_100120072F074789N/AMSPEQIILEFRALESKRLVRICAEPETESYFSVFGEPDSAQERQQMLDTIENLGCWCVVSEFYADGAWHHSDSVGFCTGYENPLKPEENFYVVDLMRAAIDSLNRPEPV*
Ga0114962_100120075F010673N/AMNPKLIPILEKLIARDSVLSSFEARRLPLSARAYVRHLYRMDDSFTPDEQDLIEELPPFADDIADSFRAGTGGDDSVYHLFDDGSLWLKTNAYSSIWADARDFAVEILLPRMTLNRMDAQLLRAIDMEDAVDGVRQDFFTAFAGVLHRSCHIAHCDARSHWDAFTRQLDDGQREIIEFGGTETGESEGQSFAESFTVNA*
Ga0114962_100120078F002227AGCAGMKLTIQSKQNAQTIVDLFNAILTGEEAESGATPLSIYDDNKHICSLVAKDGHQILELIIEREEGDRLCPGTPDTETL*
Ga0114962_100120079F001964GGAGMSRNLFGKPVYKVQISGAIGWSDLKERVVRHETVEFATRKDAERAARELNPGEYTQGRIRVVPVELSEDYDIYPTAERSKP*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.