NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10000375

Scaffold Ga0114980_10000375


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10000375 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32282
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016149Metagenome / Metatranscriptome249Y
F032583Metagenome179Y
F051711Metagenome143Y
F083915Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000037533F051711AGGAGMPYINQPIDLQRMFADLNNRLNKLETAVRFTFPNVTTDPIYPRIGDAWLNITTNQAKIVDANGTIRVLNWT*
Ga0114980_1000037546F032583AGGAGGMSKEVTLPSGAKVVLKDPSTLRVKDRKNVMRSADNAVGGDLTKALALGDALIAMLVESWSFDLIPPSIKLESLDELTMTDYDALVDHTKDAQKYLFPNLAETPQTEADPKAIGENSNA*
Ga0114980_100003755F083915AGGAGGVVDDLMSASEVCERLGITLNNLRQIQHRKTLTWVQKSGRNVFYTKADVENYFTKRQERNQG*
Ga0114980_1000037551F016149AGGAGGVARWVAPDKGVKETVIGGQSYYTDRQGIYTVENKAHAKAMKAEGFFEASLNPISSDDRMRGFTCVECGFEGWFRKCGRCGYESQETPRDGE*
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