NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114980_10002043

Scaffold Ga0114980_10002043


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10002043 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14398
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (24.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001298Metagenome / Metatranscriptome727Y
F001923Metagenome / Metatranscriptome617Y
F036603Metagenome169N
F105180Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000204322F001298N/AMSLYGTEFLDDAKEMIADFGVAGSANSGAITFQCLISDPAVQTVLEAGGYMEKTQYTVRVPAVTAAWSLPDGSNGSSAALLSAGVPIASLAQGKKIVAGGKTVRITTQTHKPASAWITLLVIDDNQ*
Ga0114980_100020434F036603GAGMWATVALLICSALGAVSVAIITDHILSSFANSNTMALLITDAGTKSDDLGLERQLTSATMGLKACRDLGWALAVGCLGVGIAVFLRFRRANAS*
Ga0114980_100020435F001923N/AMSPPPPIDNEATQSLVKDGLVASILGGLAMTARLLLSTEPVTVGWVLRRISAAAITAALVGYAITDHIASPGLRMGVVGAAGYAAPEVMDYVLKYLKARGEAEVAKVTKPNGKKKPSKRGK*
Ga0114980_100020439F105180N/AMTYAILFITGLLIGFVAGLLVYRKHSDRLKSTEDKGKTILDALKGR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.