NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10027230

Scaffold Ga0114980_10027230


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10027230 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3542
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F004431Metagenome / Metatranscriptome438Y
F009143Metagenome / Metatranscriptome322Y
F015208Metagenome / Metatranscriptome256Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1002723010F009143AGGTGGMMTKWDTIQADVSDAYVYLDEEEAYNKALEEGLVIGSTEYDEDELSKSLTLDWEAYE*
Ga0114980_1002723011F004431AGGAMTITYSIWDGAQLLGVDFKATSADEMNKVVADLQKVSKNVVAHMRKVEM*
Ga0114980_100272304F015208N/AMYKITVANDENAIHFAKEYSDELNAHEEFAKFTDWGFADEYSTINLFTPTGKCYTKIFHRNGKVVKR*
Ga0114980_100272305F017995GAGMKEYIEIIAAECDECGGAGFIFFGDEKNYDVETCDCVAEVADELTVDWVNN*
Ga0114980_100272309F003690GGAGGMIPNGFELIVSNDYGLELDSFLGAIYLPWHTIIITALALIAYKIYKRKKNK*
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Institute for Fundamental Biomedical Research
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