NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10063128

Scaffold Ga0114980_10063128


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10063128 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2235
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F010081Metagenome / Metatranscriptome308Y
F013524Metagenome / Metatranscriptome270Y
F078623Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100631281F013524N/AVVNRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFSREMVRVNDHMDADHITIQRYKNKLEKCQLKLSNYEPF*
Ga0114980_100631282F008688N/AMNRFNKIMLGSLAAILLTAMTIEPPKIKVYLIMSYRGNDLAIEKVYLKKGNAQKYCDMYKDSHNYSVEERELTE*
Ga0114980_100631283F007859N/AMKNLLIILLLCTGCTSGMYLRYSYNRALENLPLCSRVHAINNDYITYSMIEASTNSVYVIHTNYYRAYYNMGGKIIKTTPNK*
Ga0114980_100631284F010081N/AMQDKINDIITEYSEKIRGVDKTKSIPMVVKELDVIVYDMYRQLYGLRDIRSSNYNLNSFTAENKKGHCS*
Ga0114980_100631289F078623N/ANIHDKSSREFVAAYGNRHDVTVLNDDGYSVRLTFPYISAFPTVVIPTPSYENTDENGVITKIEGSIEYLRAPEDWNTVQQRIEYWENKVPNWKQTDSRYKQ*
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