NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10026803

Scaffold Ga0114963_10026803


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10026803 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3814
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011918Metagenome / Metatranscriptome285Y
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N
F098923Metagenome103N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0114963_1002680310F039993N/AMKIALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSNLDDKGVIWKDVK*
Ga0114963_1002680312F039994GGAMDNPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDKPTYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVARALFAWMQLKKGLPRL*
Ga0114963_1002680313F011918N/AYKYASENPKCACVSVVLAANDPETLVIHRWSEDELYESGIAFQAMLKVWAWSKKYNPPGMKL*
Ga0114963_100268032F098923N/AMYYEEIDRRHVKALENILAEGKCEPGRLIGEDAGHLAYIMNQMFYDKFHGHGWELDLLTGRFVRTTGE*
Ga0114963_100268036F057984GGAMRINDSNHSVSGGLSILALGPREKGKINMDGLGKIQILAERKVEMVELDIEVDDKTRDTVCHAALREITSDGDALFNYGFNKAIKRFIETKGKKCTKKSSSKKRSRR*
Ga0114963_100268037F091592GGAMISAQFTRGDQDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKSQIGKLSDCNCYRDIKEVRSLVRDVKNGTVLFWCKVAGVRIDQSTLNRVIKRGVGNVN*
Ga0114963_100268038F102824GGAMTSVRVQREDEKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFDDKGKAQDAADLWNAYALWCKERSGKRKRR*
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