NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000789

Scaffold Ga0114968_10000789


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000789 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23876
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (88.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001092Metagenome / Metatranscriptome780Y
F010754Metagenome299Y
F031029Metagenome / Metatranscriptome183Y
F075680Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000078918F010754AGGMSDWKQCRECGDDVHIERWALGYRHCLFCGEEAARTERMSWCVVQEYGKGNYQLVTPASARTTLKQTNQKEIRT*
Ga0114968_1000078937F001092GGTGGMATSKPVGGVTKSLKKAGFYEASEPKRLAIINKVTTKPQRIKMVDKLFLAKKSMKGRTK*
Ga0114968_1000078942F031029AGGAGMTYKRAADGITQKGKTEGTNLGNDGPTVSSLKGGKGGKGGKTDADMKSMGRNLAKVAAQKRG*
Ga0114968_100007899F075680N/AMAVFYTYEPNEFPAMKLFIDENIPEWFKDEEFMSTFERTDNLQGIKFYLTDVKWYESYSDIQGFEQALKKFEKLADEGNKWYWEFVRLGEEVEDIEERRSYQADGLLHVVRSIECGF*
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