NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10022008

Scaffold Ga0114968_10022008


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10022008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4372
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F032573Metagenome179Y
F043751Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_100220085F032573AGGMSKAEAWRKWWSVIHKTAPAGSYDPREAPMWDAWEAAWDESTKQSQVEITHLKEQLLRANTNDGAYKAAFLAGQMAARGGSWK*
Ga0114968_100220086F043751AGGAMKHCWPKKMYYVMCRWIAIKNGSRNYVRTPSLGRARYYSKKLKLKVRQIDVRVRGQKAYVLKGSWL*
Ga0114968_100220089F019099N/AMIINGKIVKDWDKRQISTGYQKPNQFRQITWDMGRIQSWLLGEKRLTRNLIEKVIR*
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