NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10031219

Scaffold Ga0114968_10031219


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10031219 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3562
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y
F086598Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1003121910F086598N/AMETEKIVQLTDNLLRLAAMVKRVSESVDRIEKTLKHHDRKIQQALEQSSQSERNSADDAWEGFGPKPEQQPFNPNAETYTLELSHGPQTLRRDDDEDDKEWARRKKHLMNQRVGFLNGSGVSGTPEQEANLKEIYDRLTAHGR*
Ga0114968_100312195F002227AGCAGMKLTIQSKQNAQTIVDLFNAILTGEEQESGATPISIYDEDKHICSLVAKDGHQILELIIEREEGDKLVQIGEVEELK*
Ga0114968_100312197F001964GGAGGMSRNLFGKPLYKVQISGAIGWSDLKQRVVRHETVEFASRKDAERAARELNPGEYTQGRIRVVPVELSEDYDVYPVVERVNEKPKSSI*
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