NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10038859

Scaffold Ga0114968_10038859


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10038859 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3133
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F038230Metagenome166N
F041020Metagenome / Metatranscriptome160Y
F045094Metagenome / Metatranscriptome153N
F051874Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_100388593F041020N/AMKQTPKEKAKELFNHYYILIQDIGGELGNEILVSILAEQCALFFAMQMQQEKWDEKKYKAHDYWNEVEIEIVNIGMYAM*
Ga0114968_100388594F038230GGAMQCKQDRNAYMREYMKKYRATMNEYTYKKIRERENLRLRAKYHAMNREQRQKYIEYQRSYHKLKQFTNE*
Ga0114968_100388595F003786N/AMYGIDGDLAFYANIAKEIVKTFGQIAANEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMIYRRKIIASHDNEIAALRHQKDMEERGQKEREKLYAEFPTMIKDFAGKTFNDVPLYWYDLCVQFNMIEYEEGEKRQLWEEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKKVK*
Ga0114968_100388596F051874N/AMTTLQLIEQKIEISLQAINNLLPEGYYTTNTISSTDFGNSGYILIKKICPVNYIVDICKIRISDHSATNRGRQDTEIMINLVRFNIDQLITLVDRKINPSNYEQVEIRTLTTDILTSNFQVGNKPYTTLSEPTFLGEVITKKGNVAHKYSWLKEDVTYTWIKKAN*
Ga0114968_100388597F045094N/AMDNYKIKGTTEEDVDKAINRIFRFELLDDAQQVLFVEIMNEALDVPWIAEQLTGIWDRYNQEIYDCQKEDS
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