Basic Information | |
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Taxon OID | 3300009158 Open in IMG/M |
Scaffold ID | Ga0114977_10006317 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7528 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002707 | Metagenome | 535 | Y |
F015706 | Metagenome / Metatranscriptome | 252 | Y |
F072096 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114977_100063173 | F002707 | GGA | MTQLQALTQCLVLAITASDDHKAQRASELAEQIARGLSVDQVEDCKAQALEMVEAL* |
Ga0114977_100063175 | F072096 | AGG | MNKQDIQTLAENALHEACRHIQDELGVTDGFNASIFFSGDREDDIYHILRQYIEDELMIKQYKSEEA* |
Ga0114977_100063179 | F015706 | AGG | MNTNNPIIAYHSKSELRGWNEVCRYPSDWEGWHSFDKSMIQELLNNGSQVVTCGWNMYQLVNESV* |
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