Basic Information | |
---|---|
Taxon OID | 3300009158 Open in IMG/M |
Scaffold ID | Ga0114977_10047763 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2655 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001562 | Metagenome / Metatranscriptome | 670 | Y |
F003690 | Metagenome / Metatranscriptome | 473 | Y |
F007263 | Metagenome / Metatranscriptome | 354 | Y |
F017995 | Metagenome / Metatranscriptome | 237 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114977_1004776310 | F017995 | GGAG | MSKMKEYIEIIAANCDECGGAGFLFFGDERNYDVEPCACVDEIADELTVDWVNE* |
Ga0114977_100477633 | F003690 | GGTGG | MIPTGFELSITNEYGFEFDSFLGAIYLPWHTIILTTLAVIAYKIYKRKRAK* |
Ga0114977_100477635 | F001562 | GGGGG | MSKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAELEEE* |
Ga0114977_100477638 | F007263 | AGG | MKSFSTDVIDQNEFYLIHDTTFMCCDQSQFRYSCKAHGEMMGCYFCEFDYSKECECAE* |
⦗Top⦘ |