Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10000503 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10000503 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33235
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (81.13%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

33235

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (81.13%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F012451	Metagenome / Metatranscriptome	280	Y
F012663	Metagenome / Metatranscriptome	278	Y
F035228	Metagenome / Metatranscriptome	172	Y
F071029	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000050314	F035228	GGCGG	MNKSDYDIGPMPNDWQTDLTFGHKGEKLVSEFLEKIGAGAFEVKTDRYRNGRMVLEMKQNPRRRMNDDGTAVWIPSGLAITKAEWWVYVYALDGSFVILSVPRIKRYLKANKSRFCPTKMHKFAWRSGNPSMGYLLEPEDVMDMMINEKYDLS*
Ga0114978_100005033	F012451	AGGA	VAYLAMTASTIRSTVRSITDLDTTDIPDSLLNLYIRDGYYRILDLEKRLDFLETSFSFNTVSEQRAYTISAFTADPIGQIVSVIDVSGIGMRLEMVGHDMAEQTYLGAYDTSGNPLFYSFWQGKIHLYPKPNNVRSLAVRAYREPVDWVTTGANVDASVNLHFPLVYYVCSRVYQRLEDSTMAAEYKAAFTEGVVLAKENLLKPNSHAHLRLSQGQTSGRPTFQGWMLKMGQDLGNN*
Ga0114978_1000050339	F071029	N/A	VTTLLDARQQAFLDWICTPSVARIPATQDAYAKQENVDVATLRRWKLKPIFKAEWERRVNEQQGSPERTQKLLDNLFDRAMDGDNNSAKLYLQATGRLAPVTLSVEHSGKVSDLSDTDLAALIASNAVAEQQFRLNTAKTA*
Ga0114978_1000050349	F012663	AGGA	MMPFTCQTCSVEVVVDEIPPRGEICFKCHIQTVNLGFTYGKEVFHGPTITELQRKTVSDAKINGYDAQPVTNWM*
Ga0114978_1000050350	F001396	GGA	METIIVPIIVAIISGPIVVVINRLRKENTDQHAEARTLLRQVIDRVDSVGTKIDNHIGWHDGLKDKDEA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10000503

Overview

Ecosystem & Geography

Associated Families

Sequences