Scaffold Ga0114978

Basic Information
Taxon OID	3300009159 Open in IMG/M
Scaffold ID	Ga0114978_10004047 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009159 Open in IMG/M

Scaffold ID

Ga0114978_10004047 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11913
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11913

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (78.95%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F001897	Metagenome / Metatranscriptome	620	Y
F003195	Metagenome	501	N
F009883	Metagenome / Metatranscriptome	311	Y
F032155	Metagenome / Metatranscriptome	180	Y
F053256	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114978_1000404711	F053256	AGG	MIEKELTPIELRQSEVDSYSLNVEFYNALLLTLDGNWDADLVHLKEVEIQEAARQCPMDRLERLAVLQQFDQVTKLLKTEIVERAKAMAILEVLKTE*
Ga0114978_1000404714	F032155	GAG	MSVGEWTAVGGFVIAILAAVYSSMRIIIRSVMNELMPNGGSSMKDQISRIEARLDYLYTQLIEKQSNTP*
Ga0114978_1000404715	F009883	GGAG	MNEISIVIFMFIAGTLWAVMAYSVGYREGQRQGYTRGRAVSRHIAASQKAAK*
Ga0114978_1000404716	F001897	AGGCGG	MGFLDNYEGNKERTDRWIKTYPEGRLEATIVNFDAEKGSILVRAAAWRNQTEIEPAGIDFAYGYQAAYNANMKRWFVEDTVTSALMRVMALVMGGTEKATKEVMQLVKTETPAADYDYWTTKHGDVPSYQTSAEAQESGTPSFGSSEDAWIPNAVPACSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGNWEPQV*
Ga0114978_1000404717	F000403	GGAG	MSDYMEIINPQTRIARLYYQGEVVEEYKVEQCDKCSKLTKFDAFGYQIGYDKTEKIIWFCGDCR*
Ga0114978_100040472	F003195	N/A	LYSDAQLDSFIDSAEQTILPLLTQYQSSVAFANVSDSVIYFTTIRPNYFVPGQSVIVTGAGTYNGTYTVTDDRIEPYTWTAATAAADRTYPLPFIPNATATLSGGSAASLYANTPPIENAILVVAVEIFQSITAPGNQIMADNFQPSPFVLGRSLSNRVIGLLGPFLEVETMCQ*
Ga0114978_100040478	F001731	N/A	MTVFNPVWRVTIGGVQYQTAILANLTITSGRTNIYEQAQAGYINLELINLDQSNVAIEINDGLTIELQDSTATFVPIFGGSVVEVGIAVAEVGSVAYAQRIKIIALGALSRLPKALTDGVLSQDFDGDQILTILTDLLINSWNEVPAALQWQTYEPTEQWQNAQNTGLGEIDTPGNYELAHRSSSRTDVYSLVAALATSGLGYIYESPTGQISYADSTHRSTYLATNGYVDLTANHAIAPGLSVQQRAGDVRNDITIKYGQNSTSETSANDPDSIAEFGQLSQIFTTTIKHQADAEDQADFYLSLRSYPQFNFNDFTFELTNPELDDVDRDALINVFMGMPTRITDLPLNMAAGTFLGFVEGWTWRAAYNSVSLTAIISPLAFSLQAMQWQDVAIAESWNTISGSLIWADALVVA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114978_10004047

Overview

Ecosystem & Geography

Associated Families

Sequences