NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10010903

Scaffold Ga0114978_10010903


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10010903 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6990
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049581Metagenome146Y
F054812Metagenome / Metatranscriptome139Y
F102814Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0114978_1001090316F049581AGGAGMTKQEGRPFNEDELISQIGRMNIFAISGGRVGVTKNSRGETVEIELKVSNGYRVAISLGWNDEWIVSRQFVRKGVVYDKGTVEGVYCENVGEVAYKASCFRNVKFGEKVGA*
Ga0114978_1001090320F102814AGGAMAGTKPRDSQKQRLYDAQRLAGFYDTGELMTIKEAQKFVNQVLSHQRTKKLHEQYRFQFSTYPSKILVEAGNGNHATMRTRNWETVRLIRLNKWGRNKFIVLHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNEKRVRVMTKTKKARVPRKRETESARLVA*
Ga0114978_100109037F054812GGAGMNEQEVNEKFDNLVKPQIVKPKKEPAKFPELRYLWGITLIGSFALVVLSAVISTILEAL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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