NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114978_10041680

Scaffold Ga0114978_10041680


Overview

Basic Information
Taxon OID3300009159 Open in IMG/M
Scaffold IDGa0114978_10041680 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3217
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008496Metagenome / Metatranscriptome332Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114978_100416802F008496AGGAGVDYPIPATVTEYKPEYDPKATMIIKKGYYYASPEQSRYEVENADDISRAFWRVDALTETNQRNSRAQDKLKDYLVENFEDIGEEYANEIANIMGIELSKSVEVEFNVTIKATITIPVNEEVSDLSTYDFDVEISSNNNDYEIEEFDADIDSIDERY*
Ga0114978_100416804F043404GAGGMIDTTDPLLNELAFHFVDLHNVGGIELEQWETAYNFVKHFYHTEEMVQIIIREKR*
Ga0114978_100416806F030094GAGGMKLRGIFEGTFESVWSMEVPQYEWDNYLEQHPDFDENDRDNIQEMWDYFKSIGCYDEIDDTVDKDVTMVGIETYGVEVEIN*
Ga0114978_100416807F093864GGAGMYQYNVEFVLEAMVMITHVSFDEPDLPDDFIIQEARHNIMSYYKIDPEVLHLQDLIVHEV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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