NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114981_10007162

Scaffold Ga0114981_10007162


Overview

Basic Information
Taxon OID3300009160 Open in IMG/M
Scaffold IDGa0114981_10007162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6797
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008552Metagenome331Y
F018927Metagenome232Y
F071239Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0114981_100071621F071239N/AGNQLKKIHLSNFRKKFDDKTYQAVKDAIGKNAFMANEVNINKILDIITDPEVKTKFKAWSNGYDFAVLN*
Ga0114981_1000716212F018927AGGMKKHIEITRHLTVDGTSTYYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKESTPLYDTLYKAEVDRNGVKHIIPIGNELLEVN*
Ga0114981_100071625F008552N/ALQLYRRDGIYHPYKFLAIFFILENQTIRRYNMSVMIISFEASASVDTTLFGYFSMEYDPEFFSDIKENLTDIPKSKPLAFKLDTDNVKLLQGAFHNIRRIICIPDVEKNKFTYVFKRNFEKGTAKKFKFAKLHIDKDYFYFTGHHENVDGTKPVEFQSLNFDARFIDTIQNQFIKHQESMVN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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