NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114981_10088008

Scaffold Ga0114981_10088008


Overview

Basic Information
Taxon OID3300009160 Open in IMG/M
Scaffold IDGa0114981_10088008 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1724
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F014590Metagenome261Y
F044984Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0114981_100880082F014590GGAGGVKTRHLQLVTHEHSVTIKTKSDVSSPYGPVRAGLTTSQITNEARLSELLNSLESVVDNLNFKSFTAYDTLVTAMEGVRVALSNIATEEGGTDADRC*
Ga0114981_100880083F044984GAGGMATASRKAVRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANSVPDVAGRTDYESTDEGYNGGEA*
Ga0114981_100880084F001477GGAMTMSKEFITLAHYPKESNLYTIHPQKSDLILFYEVVEAEGENTWGGADAGQAIQWLTHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVKAASL*
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