NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10006890

Scaffold Ga0114966_10006890


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10006890 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9402
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F092032Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0114966_1000689010F001055N/AMGTRSIRHVVEATLATYLSTQTGLTTVQFLTGDSNVTQTLPKAVVLCDSASPPADLPEGLGNFSCSVRITLFSNADDTTLADHRARCAALSGNMNDVASIQAAFAATGDATCYDVTPRSEDEGIDERSWATSFAYDVLTVLPPA*
Ga0114966_1000689012F001298AGGMSLFAEFLPDAKEMVADFPVAGSANSGAITFACLISDPAMQTVLESGGYMERTQYSVRLPAATASWTLPDGSTGASTAIISGGLPIASLGQGKKIVVGGKTVRITTQTYKPASAWLTLIVIDDNQ*
Ga0114966_100068909F092032AGGMSAVNTGLVCLYGIGAGQQASLYVQSYSVSSGFNNTGMVVDETGRTITGRYDDRRSEISVEGVAHASSIPALGSTLSFTAKTTSAYPGGAASVSFSGVITKVDDRGSSKGFVTVSLTAESFEEITY*
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