NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114966_10215424

Scaffold Ga0114966_10215424


Overview

Basic Information
Taxon OID3300009161 Open in IMG/M
Scaffold IDGa0114966_10215424 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1206
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F067261Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0114966_102154241F067261N/ANDIILTFFSVPFMLTKIVALVLSSIEVMSINENYKAVKSIDLWQSMKLLFARAKDIKDDLNKIKE*
Ga0114966_102154243F001808N/AMRYLAIILLLSSCSSQYHLNKAISKGYACEQTSDTIRITTLDSIPVIIRDSIVWEKIINTKDTIIKYKTVYVPKTRQDKRIEYKIKVKTIYKDRVVEKAQAKAEVQKAKAERPKGRGNLNLLFVGVAIGLLLSYLLKFARQKYLF*
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