NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075423_10559134

Scaffold Ga0075423_10559134


Overview

Basic Information
Taxon OID3300009162 Open in IMG/M
Scaffold IDGa0075423_10559134 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1205
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026389Metagenome / Metatranscriptome198Y
F029879Metagenome / Metatranscriptome187Y
F057229Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0075423_105591341F026389N/AHQKVEIIVEDIYRKDGRVFLRYAISNGGRTVYLPAAPAVFTLRSPRAPQSLITLANRQLADDIQLRWNGEAAVPVVHAELQAPVVRPGQTAHGLVAFDLPSQNNQPGGRTVVKLRFPEDGVNSVSAVLVL*
Ga0075423_105591342F029879N/AMLEDWTLSEAQLLERLRKRSAIFADIVVEQPVMLQDVDMEFCAARRKRADLGLLNHTLNLFLEPRNPFEPQRMRKPKMEATVFGTLLALVVIALLAFNLAAPRP*
Ga0075423_105591343F057229N/AMTMNRKWKRSLDRVLQEGEMFGLVFVALMLIVIEGCLVYWLHHLQFPERPVSPLGFLVMPPWYQKPRFEVTLLLTIAAGTLFSACRGLCHVWRERDRAASVEMIKSLRRRLTTAASVAALAGFNLAIVTWLR*
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