Scaffold Ga0075423_13216627

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075423_13216627

Scaffold Ga0075423_13216627

Overview

Basic Information
Taxon OID	3300009162 Open in IMG/M
Scaffold ID	Ga0075423_13216627 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	501
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Frateuria → Frateuria terrea	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002582	Metagenome / Metatranscriptome	546	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075423_132166271	F002582	AGGAGG	LDTYHVVLYIHLLALFVGIGAGAILLVCLFQLRGAQTLAEAVPWGMVAGKTARAFPVAILGLFGTGAYMTSDVWTWSTRWIDVSIAGLVLLAVQGPLVAERTAKKLERALHDNGPGPLGKNARRMTRHPGLWVAEFSNLGVVFGIVWDMTQK

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