NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114970_10051613

Scaffold Ga0114970_10051613


Overview

Basic Information
Taxon OID3300009163 Open in IMG/M
Scaffold IDGa0114970_10051613 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2656
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033435Metagenome / Metatranscriptome177N
F095472Metagenome / Metatranscriptome105N
F097357Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0114970_100516131F095472GAGMATNWPIKVEVDCPEPRPGLGRVCVGADGTSWDRANSTGWFDSVTNTAMPAPLPVTEAWSSTYSGLYARVPRSAYTLVTGSVWKQMEINAAGDYYLTATTLGTANAEYVKTTASYVANQGWYISAYVPTWVDKSALPFLRVVWGYGSASTVEMVFRGDGSCI
Ga0114970_100516133F097357N/AVRHLKRHPRETDLSLNELAEVAWAAEVWDNQLVEIVKAVMSVIAKRTF*
Ga0114970_100516134F033435AGGAGLSSIFDDIPKLEGRPNYSVDIERFIGAPGSFIFREPKASDLFPRPEVQKQLKIAYPEFPDQMLQILMIMARCYVIQAGDGEINPGRRFAQLARDRSDIYLYVVAEFAKAFPIDFAAAVDEVPND*
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