NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114975_10001851

Scaffold Ga0114975_10001851


Overview

Basic Information
Taxon OID3300009164 Open in IMG/M
Scaffold IDGa0114975_10001851 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14707
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (86.84%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F002052Metagenome / Metatranscriptome599Y
F010749Metagenome / Metatranscriptome299Y
F011670Metagenome / Metatranscriptome288Y
F099274Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0114975_1000185114F011670N/AMQISRAEQSSIKYNLEQYRLDAARMEKQRTDDYAKQIEERRLDRIIAERVSRNLRLDLDKGRNIDIEC*
Ga0114975_1000185118F002052AGGMTRTITFSFTIECAGQGDADLAKVESMIDLSMQDLVFDDEFIAALDEKESVTINVKMVN*
Ga0114975_1000185122F000354GGAGMAKVNYNSFSSFDLNEACDHFDSEKQSNWKKIGKFIVADGQDYVNIMETEFDFEDTADSEYMAFEAGVKYALTKMNIAFEAAGLDLQVCETDLVESMGFVLVRTDDTPEDFVKRVLKKPVLMVESWID*
Ga0114975_1000185133F010749GGAMKKFTFWRNSIVAETYVVECETEEQARTMLMNGEVEVFSEEWMDWATRDFELEDVEIIDPLYLMIKQHTQKETT*
Ga0114975_1000185134F099274AGGAGMTTVEGKTVKVGDYVGFKCDVEQGGVIYKIEGDRLFLRAGPDGFEGGYIGRQETTVQQASDCWID*
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