NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114975_10044310

Scaffold Ga0114975_10044310


Overview

Basic Information
Taxon OID3300009164 Open in IMG/M
Scaffold IDGa0114975_10044310 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2636
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064722Metagenome128Y
F074449Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0114975_100443101F074449GAGMHNSELLKRNSVYSAIYQQMLGYQNAYLGGYVFKQDVRKKRPSEDSVLWNDLIKNTVAQPVCRYIVDTINDVLFEPGVKRNLKFATPLGQYIDPNNCDWVDLFVNDCDLQTRSLTSFMEQVGDLTSIFGHCWVAVDMPQETEGNLGRPYTCAISPLNVWDWCFEWYGGKPILQYVKIKEMEDDENYYLKCYHLGDANNPSYWKSYEVPKTVQQSNELDDESLCTGTGEFPAGMSIPVFIAFGRKDPRTFDLGVSDIDAASDAMREYYKLECEKYTALQFAHTIIRAEKGISIPVHAGAIVRALQGQVEAISVDTGDVDKILKAQQDILEQIEALTGLGGLRTSKNQIASGVSIIEERKQLHRTAKSKARLMEVTEGLIFTYAARYMGMRWAGQINYNTDYEAHDTNYRMALIKEAKALVGDN
Ga0114975_100443103F064722N/AEMRSGNKNFIEEQKRIISPLKFAQDYMCQWESVADMFFYAWDKTKHCGEVSDRGGDIYTFHDWNKRVMTAVVAQVIKPGSIDGKIEIIKSYAIPDCSTEGIAQAIRIDFPKRRINSIIDMSGGQVNRDTTSAFGVTDRTIIEKYGFTIVNTRKSNPLVSDTDNTSNAFIARGGLVVRPDDKFLLDALQTYHFEDASRKRLVKYTEQKYAHIDGLGDCIRYGIHHLFPITHDSPHNMPEYIGMDPRYQAMTQSGNKYMPESPLYPGGPSWEEIMNGEEEKDYQVWN*
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