NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105104_10170574

Scaffold Ga0105104_10170574


Overview

Basic Information
Taxon OID3300009168 Open in IMG/M
Scaffold IDGa0105104_10170574 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1180
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034567Metagenome / Metatranscriptome174Y
F058818Metagenome / Metatranscriptome134N
F082590Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0105104_101705742F082590N/AMEKIKTFSDTLTEEQYNKLTHLNYQRKPDHPDEIYLSINFRDLDKSIIGIVASLPIVKFPGSFFDYFLDGDQQFYLVTYKEKVFLVDTQGYNYARYVIQLKDLVLLEKEETQQMKAHPGMAEEIIGMLKHMEVDGETMEHIIRSVGMEEQMLGQLFLTGDDYLVSYLIEKRNRTYDL*
Ga0105104_101705743F034567GAGGMIFNYYDYVNHYGNRMFAIAGVNAMPARYCSILFTGSYKECMERLDPKGLEGSVEDICQRVAFPK*
Ga0105104_101705744F058818N/AMIKELLEKQEILGDIAAELYGDLWIMNEKFWGSPTEKELREVAFTLIDLGYTVEPTPVQVEEAKIIAKKLGFELPPED*
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