Scaffold Ga0105097

Basic Information
Taxon OID	3300009169 Open in IMG/M
Scaffold ID	Ga0105097_10000132 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29484
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (80.85%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

29484

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (80.85%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F015731	Metagenome / Metatranscriptome	252	Y
F020909	Metagenome	221	Y
F021112	Metagenome	220	Y
F028173	Metagenome / Metatranscriptome	192	Y
F033806	Metagenome	176	N
F045100	Metagenome / Metatranscriptome	153	Y
F070118	Metagenome	123	N
F077306	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105097_1000013210	F028173	GAG	MADDVIVLTGIKETIDALKQFDKDAVKRFNKVINTELAGAQKDARNIISEDPPMSGWRKADAAKGRVRGGKGWPGWNAGEIKSKITKTKAQGKVRGDYTTSAGALLNKSAAGAIFEVAGKKTKAGFGGGSGQQFLRTLGNRFGKASRVVWRVVDKDRARIEENVARALEQAKADLQKHLNKERA*
Ga0105097_1000013212	F077306	N/A	MPAFDGTTSPSVAVQFLKSGTWTSVTTTDVIQIDIRRGRTRQNERDQAGISVVVLNNTSGFYDPDNTSGSNPWVVGGVSILRDGLQMRIVATIGGTSYNLYYGFLEETQVNLDIVSSVTMTFVDGIAYIADAQAPALATAGFAETAATRVGRILTNYVGWTGSTSLTGTVGMLATVQNRSCMALIYQAVDAIAGRFYISRSGVATLVPLADKFSRPTQLLFTDTQASNTVGYMQLLTNPGTYFVVNQAVVDRTNTTKQYTSRYNPSVSAYGIAKTVIDAPVATDSNAQNLALYESRKLAEPLTYVERIDFNALALSTYGALYPDFLATELSDQVSVVRSGRQWNLVVEGMAHTITQNNWVCSYTTSAINPYSITI*
Ga0105097_1000013217	F000368	GGAG	MEQFKQITLTWFRAAAAAAIALYLAGETDLKTLGMAAIAGAAGPILKWLDSSAVDFGRGSK*
Ga0105097_1000013224	F020909	GGAG	MITKRGKRVRAVAIAVGIILIWQVASNLWWVGIDAPSAEFLGWCWGSMSECVVL*
Ga0105097_1000013229	F033806	AGG	MNLDQFKQPRDPLFSVHTHSDGSIALYLEEQDAVKDLVQDVVGAYPLDDLDLLRHSADRSVKSENYFEHLDNARDNLSENAPLLCNMTEKEALILAEDLIRAVKFARISREAGTNYPSLKAVK*
Ga0105097_1000013233	F015731	N/A	MGVNMSVEIETGVVDFDANTAAWLEQYKSAVAKIKELQEVADVARAHIERALGDNETGMFLNRPVVRYSFVESRRFDTKRAREILPAQVIEALEIVSTSRRFSIVNEDN*
Ga0105097_1000013244	F070118	AGGA	MSELDFKPISCKKCGNLIWAGVSASSRCDVKLDTARLNLVQEVLALTSGLGTYQVHRTAVSFEATRRTAGRMTAADPIVLATHTCRALTVFAEEAPDYFNRVKLSTTSEKVPF*
Ga0105097_1000013245	F021112	AGGCGG	MWLTTIPNLQVMAGDYITPGRSGSGTVSAERSIGVNVNALDYSMAIELLGILHSWESEIRSARQLTPPALLKKQPTTALEVETACVFQLAHLDWTLGQEWAADFYNEIKEQYAKGMAAAKQFVEQPRRIPCPTDECGKYVVIDAENLMSDVSCFGCKQSWTVLRLVALAMSNPNRKFFLDVEAIALWLGISQRQVHKIIKANGIAKNGKMYDLAAVIANR*
Ga0105097_100001326	F045100	AGGAG	MSYTVTSDKFEAKKKGETITDKELLELGLNADALVAGEHLKKTVTTKPATVEETK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105097_10000132

Overview

Ecosystem & Geography

Associated Families

Sequences