Scaffold Ga0105097

Basic Information
Taxon OID	3300009169 Open in IMG/M
Scaffold ID	Ga0105097_10004648 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6931
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6931

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018511	Metagenome / Metatranscriptome	234	N
F058819	Metagenome / Metatranscriptome	134	N
F060725	Metagenome	132	N
F090088	Metagenome / Metatranscriptome	108	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0105097_100046481	F058819	N/A	AYSFYEVSVGNYSGSYLQLSEKIQVNIEPNCSDNIDLHWFGKYGGAESYQFRGLIQDLQNANADIINISQPWNVAASPRANSFDKTIIKTNQRVNKRKQVKCSIPHEDALYISSLFYSPEVYIIENGKYVNVTISNAETLTDNNRTTDIEVSFEITYPNKPTAQL*
Ga0105097_100046482	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIDLGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFLASNFKVSLIGNNADWFSDVGNILVRDLGWSTIEVSETTVKATYNPVTAEYCFILMKWKAWENETYILYNELSPAIFIWQILEKAFANKGYQLNSIFKTDPFNRLIIPMGLNLDADYIKDFVNLRASNPTPSSFVYSAGDNGTVDITFTDETTSPNFDTGGNYTGGVYTAPISALYDIAAELNATLTASIGDINQFAELILFFEVNGNNVSTYDLTNETSLNDSIILEFLGDLVATDTVKLRLRYENVTFSLNIAGSLSIVAEKEGLETGETVNLQYIIPISWYVRDIISDLTTVFNLAWETDVLNKQVYAYPKDDYTIRYRANSTGAASLTSFDGFFKGSNKYDLNTRDIDGSDFQVLDGYKSSQVLAYATDDDTTNKEEERRGVNIYSGGYNFPQDRFENGIEFIYTKFFAKAIHINDVEITSGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRSGLDGYVRLFDETSSATSAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYTTFAKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIIGGSTIGINIDTHFDGANYEVVVNGVTKG*
Ga0105097_100046483	F090088	AGG	MEDKEALGKKVFLEFYSSFILDDEIEETGRVFYLAQKASIIHLNLIRGVLQNDEYIINMAYLKDVINKIKI*
Ga0105097_100046485	F018511	N/A	MKGNSIWGELASRIPDEYKEQVMATVDRTYRVLLIDPSDMDYLFQIYNNFVNHYEPERRNCPACRTKVVGKMRQIVQFWRDGQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105097_10004648

Overview

Ecosystem & Geography

Associated Families

Sequences