NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114995_10004090

Scaffold Ga0114995_10004090


Overview

Basic Information
Taxon OID3300009172 Open in IMG/M
Scaffold IDGa0114995_10004090 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9752
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066664Metagenome / Metatranscriptome126N
F070577Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0114995_1000409016F070577N/AMDIFMSKFEIIQGSKSEKDKILLYNGRAVAFEDVAKMCIFFMANEDNLYPPPRFKGGQMFIDYMTEVLETRRVPTDSKYAIKKNHGVVKV*
Ga0114995_100040906F066664N/AMNMIQERMRNKALSAFGEVDYQIDNFIDNGKSDFSMYEYLKQLEYSGKVISFLKGQLKDQIAEVKNEEKCEQLTEAYSFMTPTVKKRFIKWLESIEKDIEKYVEEYKPVKKTPKPKTPKQLVSKLPYCTQWEKYKSINPEEIIRAKMLFTWNTSSKKMTCFESYGGLKVRGSDIIDYDICIEKTLTDTKLFDRLYTGGNIIAKGFMDEIPRSKEKQGNNRITKNTLLIKVVT*
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