NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114995_10012726

Scaffold Ga0114995_10012726


Overview

Basic Information
Taxon OID3300009172 Open in IMG/M
Scaffold IDGa0114995_10012726 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5195
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F008154Metagenome338Y
F041486Metagenome / Metatranscriptome160Y
F055858Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0114995_1001272611F041486GGAMIISTVFGFILTIVGINETAIAGYKVMMTANNIHEKTEKKEWKASLHEEAQRILKDAIRKAGE*
Ga0114995_1001272612F008154AGCAGGMSKDKETKDLNDCYQELFKTVIDLQARYNNQMIAGTMMAQALRIYKSNLTEEGFNAMVQTIADSSDTIEPFDPPTIN*
Ga0114995_100127262F055858AGCAGMTNSDNTFGTYNKVTSIISQIDDGSTALTTFANVAAAKTFIFTDEALTVMDETCTVLEWALQADGNGDNTQLKTTFAFGTKGTADIAAADDWAGQYNSRKTALVNATNWTKVGCTFTDSSDHLV*
Ga0114995_100127268F000379AGGAGMYNKIDYENKHGMMVGYIDGSQNVSAVQTGWDMKPEALSKLLLDKYPTREDAMQVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWNKEVMRKDVGHLFLFMKGTWQYSDNGIDWTPAIEEFIPSDFDNDGKAFTGIRDAIETGKA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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