NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114995_10049979

Scaffold Ga0114995_10049979


Overview

Basic Information
Taxon OID3300009172 Open in IMG/M
Scaffold IDGa0114995_10049979 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2390
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005796Metagenome / Metatranscriptome390Y
F025150Metagenome / Metatranscriptome203Y
F047922Metagenome / Metatranscriptome149Y
F084734Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114995_100499792F047922AGGAGGMTPQEISDHKRKWIMASYYESHVHSDYRSAVVDWCKDNCFQWRYDIKRFTESYGDTVRFELEEDFQAFNEWYREKRHG*
Ga0114995_100499794F025150GGAGMINVYTEGRINNDYDNFIDDVIMAIFPEDAKYDIYIEAKKFVDKDGTHAGFCTGDELESVISVATHWVFEDGEEIAYEPHEMASNLAHELVHAKQFCRGQINMVDNVWKHNNLVLDCDHVDYIDLPWEVEAYGYETILTDIYWGNDQ*
Ga0114995_100499796F084734N/AMKKYKRKPWTDTERKTLAENYLSIDIELMMHLLPERSQQAIRNQVSYLKKRGYRFKTRLNKG*
Ga0114995_100499797F005796GGAGMLELVVLMVCVCGCGMTCYHLGKQEGIETTIEHLIDKGMIEVDE*
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Institute for Fundamental Biomedical Research
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