NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114995_10480103

Scaffold Ga0114995_10480103


Overview

Basic Information
Taxon OID3300009172 Open in IMG/M
Scaffold IDGa0114995_10480103 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)680
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048582Metagenome148Y
F103917Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0114995_104801031F048582N/ASRANAEIQDAGDHMDDIFIAVDSGSDYDNVLDSIEQARKNLAEADFRLGDAEAILRGYLQAKHAPQPEPQPSMDFEQLQEQLETLSVLKDALPDAEGEQDE*
Ga0114995_104801032F103917AGGAGMSEFKKGDLIYIPSVTIIFKWSDDENIPVGPTKTLKKPKRALFLKDVSDYYSQVIFDAERWTVKKTDIWELNSLPMIKGDQDLGSSRIMIKELKGE*

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